Emerson Harkin
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Education
Post-doctoral research fellow
- Max Planck Institute for Biological Cybernetics
- Advisor: Peter Dayan
Ph.D. in neuroscience
- Center for Neural Dynamics, University of Ottawa
- Advisor: Richard Naud
- Thesis: Making sense of serotonin through spike frequency adaptation
M.Sc. in neuroscience
- Center for Neural Dynamics, University of Ottawa
- Advisors: Jean-Claude Béïque and Richard Naud
- Thesis: A simplified serotonin neuron model
B.Sc. with honours in biomedical sciences, summa cum laude
- Faculty of Science, University of Ottawa
- Advisor: Paul Albert
- Thesis: Transcriptional regulation of the serotonin-1A receptor by lithium
Honours and awards
Humboldt Research Fellowship (declined)
- Alexander von Humboldt Foundation
Post-Doctoral Fellowship
- Natural Sciences and Engineering Research Council (NSERC)
Queen Elizabeth II Graduate Scholarship in Science and Technology
- Government of Ontario
Queen Elizabeth II Graduate Scholarship in Science and Technology
- Government of Ontario
Doctoral Post-Graduate Scholarship (PGS-D)
- Natural Sciences and Engineering Research Council (NSERC)
Frederick Banting and Charles Best Canada Graduate Scholarship (CGS-M)
- Canadian Institutes of Health Research (CIHR)
Excellence Scholarship
- University of Ottawa
Graduate Admission Scholarship
- University of Ottawa
Undergraduate Student Research Award
- Natural Sciences and Engineering Research Council (NSERC)
Dean's Honour List
- Faculty of Science, University of Ottawa
Undergraduate Admission Scholarship
- University of Ottawa
Research contributions
Publications
- Harkin EF, Béïque J-C, and Naud R. "Extracting value coding features from individual serotonin neurons." biorxiv, 2025.
- Harkin EF, Grossman CD, Cohen JY, Béïque J-C, and Naud R. "A prospective code for value in the serotonin system." Nature, 641(8064):952-959, 2025.
- Lynn MB, Geddes S, Chahrour M, Maillé S, Caya-Bissonnette L, Harkin E, Harvey-Girard É, Haj-Dahmane S, Naud R, and Béïque J-C. "Nonlinear recurrent inhibition through facilitating serotonin release in the raphe" Nature Neuroscience, 28(5):1024-1037, 2025.
- Harkin EF, Nasrallah G, Le François B, and Albert PR. "Transcriptional regulation of the human 5-HT1A receptor gene by lithium: Role of Deaf1 and GSK3β." International Journal of Molecular Sciences, 24, 2023. doi: 10.3390/ijms242115620
- Harkin EF, Lynn MB, Payeur A, Boucher JF, Caya-Bissonnette L, Cyr D, Stewart C, Longtin A, Naud R*, and Béïque J-C*. "Temporal derivative computation in the dorsal raphe network revealed by an experimentally-driven augmented integrate-and-fire modeling framework." eLife, 12, 2023. doi: 10.7554/eLife.72951
- Harkin EF*, Shen PR*, Goel A, Richards BA*, and Naud R*. "Parallel and recurrent cascade models as a unifying force for understanding subcellular computation." Neuroscience, 489:200-215, 2022. doi: 10.1016/j.neuroscience.2021.07.026
- Lee C, Harkin E, Yin X, Naud R, and Chen S. "Cell-type-specific responses to associative learning in the primary motor cortex." eLife, 2022. doi: 10.7554/eLife.72549
- Mazhar H, Harkin E, Foster B, and Harris C. "Complementary and alternative medicine use in pediatric ADHD." Current Developmental Disorders Reports, 3(1):15-24, 2016.
Textbook chapters
- Harkin EF, Béïque J-C, and Naud R. "A user's guide to generalized integrate-and-fire models." Computational Modelling of the Brain, eds. Giugliano, Negrello, and Linaro, Springer, 69-89, 2022. doi: 10.1007/978-3-030-89439-9_3
Conference abstracts
- Harkin EF, Dayan P. "Multi-timescale reward prediction learning dynamics with entangled connectivity between the striatum and the dopamine system." Poster presented at FENS, Barcelona, Spain, Jul 2026.
- Harkin EF, Béïque J-C, and Naud R. "Extracting value coding features from individual serotonin neurons." Poster presented at COSYNE, Lisbon, Portugal, Mar 2026.
- Harkin EF, Grossman CD, Cohen JY, Béïque J-C, and Naud R. "A prospective code for value in the serotonin system." Invited talk at the Max Planck UCL Centre for Computational Psychiatry, virtual, Sep 2024.
- Harkin EF, Grossman CD, Cohen JY, Béïque J-C, and Naud R. "A prospective code for value in the serotonin system." Invited talk as part of the Theoretical Sciences Visiting Program at the Okinawa Institute of Science and Technology, Okinawa, Japan, Jul 2024.
- Harkin EF, Grossman CD, Cohen JY, Béïque J-C, and Naud R. "Serotonin predictively encodes value." Poster presented at COSYNE, Lisbon, Portugal, Mar 2024.
- Harkin EF, Béïque J-C, and Naud R. "Serotonin predictively encodes value." Talk at Neuroscience, Washington, D.C., U.S.A., Nov 2023.
- Harkin EF, Payeur A, Lynn MB, Boucher J-F, Caya-Bissonnette L, Cyr D, Stewart C, Longtin A, Naud R*, and Béïque J-C*. "Temporal derivative computation in the dorsal raphe network revealed by an experimentally-driven augmented integrate-and-fire modeling framework." Poster presented at Neuroscience, San Diego, U.S.A., Nov 2022.
- Harkin EF, Payeur A, Lynn MB, Boucher J-F, Caya-Bissonnette L, Cyr D, Stewart C, Longtin A, Béïque J-C*, and Naud R*. "Temporal derivative computation in the dorsal raphe network revealed by an experimentally-driven augmented integrate-and-fire modeling framework." Poster presented at Bernstein Conference, virtual, Sep 2021. doi: 10.12751/nncn.bc2021.p083
- Lynn M, Geddes SD, Chahrour M, Maillé S, Harkin E, Harvey-Girard É, Haj-Dahmane S, Naud R, and Béïque. "Dynamic filtering of habenulo-raphe inputs by a serotonergic reccurent inhibitory network acting over behavioural timescales." Poster presented by M Lynn at Neuroscience, virtual, Sep 2021.
- Harkin E, Payeur A, Boucher J-F, Caya-Bissonnette L, Cyr D, Longtin A, Lynn M, Stewart C, Naud R*, and Béïque J-C*. "From single neurons to networks in the dorsal raphe nucleus." Poster presented at COSYNE, virtual, Feb 2021.
- Harkin E, Payeur A, Boucher J-F, Caya-Bissonnette L, Cyr D, Longtin A, Lynn M, Stewart C, Béïque J-C*, and Naud R*. "Multiple mechanisms of gain modulation in the serotonin system." Talk presented at Canadian Computational Neuroscience Spotlight, virtual, Jun 2020.
- Harkin E, Payeur A, Boucher J-F, Caya-Bissonnette L, Cyr D, Longtin A, Lynn M, Stewart C, Béïque J-C*, and Naud R*. "Multiple mechanisms of gain modulation in the serotonin system." Talk presented at Neuromatch 1.0, virtual, May 2020.
- Harkin E, Payeur A, Lynn M, Boucher J-F, Longtin A, Naud R*, and Béïque J-C*. "Multiple mechanisms of gain modulation in the serotonin system." Poster accepted to Canadian Association for Neuroscience 14th Annual Meeting, Montréal, Canada, May 2020.†
- Harkin E, Lynn M, Payeur A, Longtin A, Naud R, and Béïque J-C. "Non-uniform subthreshold dynamics and integrative features in dorsal raphe neurons." Poster presented at Canadian Association for Neuroscience 12th Annual Meeting, Vancouver, Canada, May 2018.
- Harkin E, Cardin V, and Albert P. "Transcriptional regulation of the serotonin 1A receptor by lithium: roles of glycogen synthase kinase 3β and Deaf-1." Poster presented at Ottawa-Carleton Institute of Biology Symposium, Ottawa, Canada, 2016.
- Equal contribution.
- Abstract accepted, but in-person conference cancelled due to COVID.
Mentorship
Research advisor
Advise Max Planck Institute for Biological Cybernetics PhD student on simulation study of biological implementation of temporal difference learning through weekly meetings. (Ongoing.)
Undergraduate research rotation supervisor
Advised École Polytechnique Fédérale de Lausanne engineering undergraduate on training spiking neural networks with Richard Naud during six-week research rotation leading to successful defence of model parameter optimization and software architecture improvement.
M.Eng. thesis supervisor
Advised Université de Lyon master's student on robust analysis of large-scale calcium imaging data with Richard Naud during six-month remote research rotation leading to successful degree completion.
Undergraduate research rotation supervisor
Advised University of Ottawa Faculty of Medicine undergraduate on simulation of generalized leaky integrate-and-fire neuron models with Richard Naud during six-week rotation leading to successful poster presentation.
Service
Student representative
- Canadian Association for Neuroscience Hill Day
- Theme: science outreach
Met with Members of Parliament as part of a group of neuroscience researchers and students to advocate for increased public research investment in Canada.
Invited speaker
- University of Ottawa Brain Health Awareness Week
- Theme: science outreach
Presented highlights of my work on computational models of the serotonin system to >100 person public audience at yearly outreach event to increase community awareness of local neuroscience research.
Classroom workshop volunteer
- Let's Talk Science
- Theme: science outreach
Led hands-on elementary school classroom activities together with another volunteer to increase youth science engagement.
Mentorship circle volunteer
- Circles of Support and Accountability
- Theme: restorative justice
Offered social support while maintaining personal accountability of a recently-incarcerated person together with a circle of four other volunteers, helping the individual to reintegrate into society.